Update logging and enhance .gitignore for Atlas directory

- Introduced a logging system using `tracing` and related crates to improve log management and output formatting.
- Updated `.gitignore` to include the `.atlas/` directory, ensuring that log files and other generated content are not tracked by Git.
- Enhanced project templates to include the new `.gitignore` settings for Atlas in various project types.

These changes aim to improve logging capabilities and maintain a cleaner repository by ignoring unnecessary files.

Cargo.lock

@@ -201,7 +201,8 @@ dependencies = [
  "csv",
  "data-encoding",
  "embed-resource",
- "env_logger 0.11.9",
+ "filetime",
+ "flate2",
  "fs-err",
  "futures",
  "gix",
@@ -252,6 +253,10 @@ dependencies = [
  "thiserror 2.0.18",
  "tokio",
  "toml",
+ "tracing",
+ "tracing-appender",
+ "tracing-log",
+ "tracing-subscriber",
  "uuid",
  "walkdir",
  "winreg 0.55.0",
@@ -4869,9 +4874,33 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "63e71662fa4b2a2c3a26f570f037eb95bb1f85397f3cd8076caed2f026a6d100"
 dependencies = [
  "pin-project-lite",
+ "tracing-attributes",
  "tracing-core",
 ]
 
+[[package]]
+name = "tracing-appender"
+version = "0.2.4"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "786d480bce6247ab75f005b14ae1624ad978d3029d9113f0a22fa1ac773faeaf"
+dependencies = [
+ "crossbeam-channel",
+ "thiserror 2.0.18",
+ "time 0.3.47",
+ "tracing-subscriber",
+]
+
+[[package]]
+name = "tracing-attributes"
+version = "0.1.31"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "7490cfa5ec963746568740651ac6781f701c9c5ea257c58e057f3ba8cf69e8da"
+dependencies = [
+ "proc-macro2 1.0.106",
+ "quote 1.0.44",
+ "syn 2.0.117",
+]
+
 [[package]]
 name = "tracing-core"
 version = "0.1.36"
@@ -4906,6 +4935,7 @@ dependencies = [
  "sharded-slab",
  "smallvec",
  "thread_local",
+ "time 0.3.47",
  "tracing",
  "tracing-core",
  "tracing-log",